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["Putative cis-acting regulatory elements of the genes involved in the lignin pathway"]
["Cis-element","Function","CsPAL","CsC4H","Cs4CL","CsHCT","CsC3'H","CsF5H","CsCOMT","CsCCoAOMT","CsCCR","CsCAD","CsPER","CsLAC"]
["3-AF1 binding site ","light responsive element",null,1]
["ACE ","cis-acting element involved in light responsiveness",1,1]
["Box 4 ","part of a conserved DNA module involved in light responsiveness",6,2,5,4,1,3,3,8,1,9,1,3]
["ATCT-motif ","part of a conserved DNA module involved in light responsiveness",{"$nulls":5},1,{"$nulls":5},1]
["Box II ","part of a light responsive element",{"$nulls":6},1,null,1]
["AT1-motif ","part of a light responsive module",{"$nulls":5},1,null,null,1,null,1]
["G-Box ","cis-acting regulatory element involved in light responsiveness",null,null,2,2,null,1,2,1,null,null,2,3]
["G-box ","cis-acting regulatory element involved in light responsiveness",2,null,2,2,1,5,4,1,2,null,2,2]
["I-box ","part of a light responsive element",null,1,{"$nulls":3},1,null,null,2]
["MRE ","MYB binding site involved in light responsiveness",null,1,1,{"$nulls":4},1,null,2,null,2]
["P-box ","gibberellin-responsive element and part of a light responsive element",{"$nulls":5},1,null,null,1]
["GT1-motif ","light responsive element",2,4,null,null,1,1,1,null,null,2,1,1]
["GATA-motif ","part of a light responsive element",1,null,null,1,{"$nulls":7},2]
["TCT-motif ","part of a light responsive element",4,1,1,null,3,null,1,3,1,1,2,1]
["TCCC-motif ","part of a light responsive element",3,null,1,null,1,null,1,{"$nulls":3},1]
["Sp1 ","light responsive element",null,1,null,6,1,{"$nulls":5},1]
["LS7 ","part of a light responsive element",{"$nulls":10},1]
["chs-CMA1a ","part of a light responsive element",1,1,{"$nulls":5},1]
["chs-CMA2a ","part of a light responsive element",null,1]
["chs-Unit 1 m1 ","part of a light responsive element",null,2,{"$nulls":6},1]
["AAGAA-motif ",{"$nulls":3},4,1,null,1,null,null,1,null,null,3]
["A-box ","cis-acting regulatory element",1,2,null,1,null,null,1,2]
["ABRE ","cis-acting element involved in the abscisic acid responsiveness",2,null,5,3,1,4,6,2,2,null,4,3]
["ARE ","cis-acting regulatory element essential for the anaerobic induction",2,null,2,1,1,2,2,2,1,2,4,2]
["AP-1 ",{"$nulls":11},1,1]
["ABRE3a ",null,1,null,1,null,null,1,1,null,2]
["AT~TATA-box ",null,6,5,3,39,20,1,9,7,2,5,8]
["ABRE4 ","ABA (abscisic acid) response",1,null,1,null,null,1,1,null,2]
["AC-I ",null,1,2,{"$nulls":3},3]
["CAAT-box ","common cis-acting element in promoter and enhancer regions",37,41,36,39,35,31,37,47,43,38,38,44]
["AT-rich element ","binding site of AT-rich DNA binding protein (ATBP-1)",1,1,{"$nulls":9},1]
["CAT-box ","cis-acting regulatory element related to meristem expression",null,1,null,null,1,1,{"$nulls":3},1,1]
["AC-II ",null,1]
["Box II -like sequence ","cis-acting regulatory element",null,null,1,{"$nulls":7},1]
["AuxRR-core ","cis-acting regulatory element involved in auxin responsiveness",{"$nulls":11},1]
["CCAAT-box ","MYBHv1 binding site",{"$nulls":3},2,2,null,1,null,null,3]
["CCGTCC motif ",null,1,2,null,1,null,null,1,2]
["CCGTCC-box ",null,1,2,null,1,null,null,1,2]
["CGTCA-motif ","cis-acting regulatory element involved in the MeJA-responsiveness",1,1,1,null,2,3,1,2,3,7,3]
["CARE ",null,1,null,1,{"$nulls":4},1,1]
["CAG-motif ",{"$nulls":3},1]
["ERE ","ethylene-responsive element",3,2,1,4,2,null,null,6,3]
["F-box ",{"$nulls":5},1]
["AT-rich sequence ",null,1,null,null,1]
["CTAG-motif ",null,null,1,null,1]
["GTGGC-motif ",{"$nulls":4},4,1,null,1,{"$nulls":4},1]
["MBS ","MYB binding site involved in drought-inducibility",{"$nulls":4},1,null,2,null,1,1]
["MBSI ","MYB binding site involved in flavonoid biosynthetic genes regulation",{"$nulls":11},1]
["MSA-like ","cis-acting element involved in cell cycle regulation",{"$nulls":4},1,null,1,null,null,3]
["MYB ","myb recognition motif",4,6,2,9,6,1,2,5,1,3,1,5]
["MYB recognition site ",{"$nulls":4},2,2,null,1,null,null,3]
["MYB-like sequence ","possible MYB binding region",null,3,2,1,null,1,null,3,1,1,null,3]
["MYC ","myc recognition sequence",6,3,7,3,null,4,2,2,3,1,2,3]
["Myb ","myb recognition motif",null,3,null,1,1,null,2,2,2,1,1]
["Myc ","myc recognition sequence",1,1,null,null,1,1,null,1,null,null,2]
["Myb-binding site ","Part of the RNR1b promoter. The RB/E2F pathway is involved in the control of the G1/S transition of the eukaryotic cell cycle. Ribonucleotide reductase (RNR) is a key enzyme in the pathway of DNA synthesis. It catalyzes the reduction of ribonucleoside diphosphates (NDPs) in deoxyribonucleoside diphosphates (dNDPs), a rate-limiting step in DNA synthesis",1,1,null,5,2,null,1,null,null,1,null,2]
["STRE ","activation by heat shock, osmotic stress, low pH, nutrient starvation",3,3,null,1,4,2,1,1,5,3,1,3]
["DRE core ",{"$nulls":7},2]
["GA-motif ",{"$nulls":3},1,{"$nulls":4},1]
["GARE-motif ","gibberellin-responsive element",null,1,null,3,1]
["HD-Zip 1 ","element involved in differentiation of the palisade mesophyll cells",null,1,{"$nulls":8},1]
["LTR ","cis-acting element involved in low-temperature responsiveness",1,null,null,1,2,{"$nulls":4},1,2]
["GCN4_motif ","cis-regulatory element involved in endosperm expression",{"$nulls":6},1,null,null,1,null,2]
["HD-Zip 3 ","protein binding site",null,1]
["TATA ","core promotor element",3,null,1,1,2,1,null,1,1,1,1]
["TATA-box ","core promoter element around -30 of transcription start",63,29,47,131,80,85,34,90,41,38,68,37]
["TC-rich repeats ","cis-acting element involved in defense and stress responsiveness",{"$nulls":5},1,null,null,1,null,1]
["TCA ","auxin-responsive element",{"$nulls":3},1,2,null,null,2,1,1]
["TCA-element ","cis-acting element involved in salicylic acid responsiveness",null,null,1,null,null,2,{"$nulls":5},1]
["TGACG-motif ","cis-acting regulatory element involved in the MeJA-responsiveness",1,1,1,null,2,3,1,2,3,7,3]
["O2-site ","cis-acting regulatory element involved in zein metabolism regulation",null,2,1,null,2,{"$nulls":3},1]
["TGA-element ","auxin-responsive element",1,null,1,1,null,null,2,null,1,1,1]
["TATC-box ","cis-acting element involved in gibberellin-responsiveness",1,{"$nulls":6},1]
["W box ","elicitation; wounding and pathogen responsievness. Binds WRKY type transcription factors",null,2,null,null,1,2,4,null,3,3,null,1]
["WRE3 ","wound inducibility (third region)",1,2,null,null,4,3,null,1,1]
["as-1 ","Part of the promoter of the Arabidopsis gene encoding Pro dehydrogenase (ProDH), a mitochondrial enzyme involved in the first step of the conversion of Pro to glutamic acid. The ProDH gene in Arabidopsis is up-regulated by rehydration after dehydration but is down-regulated by dehydration. ProDH is also induced by L-Pro and hypoosmolarity",1,1,1,null,2,3,1,2,3,7,3]
["circadian ","cis-acting regulatory element involved in circadian control",null,1,{"$nulls":3},1,{"$nulls":3},1]
["box S ",{"$nulls":5},2,{"$nulls":3},1]
["WUN-motif ","Part of the NGR1 gene promoter, encoding S-like ribonucleases (RNases) induced by wounding in Nicotiana glutinosa leaves",null,1,null,null,1,null,null,2,null,null,2,1]